PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018719-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB
Protein Properties Length: 233aa    MW: 26186.6 Da    PI: 8.4907
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018719-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed++l+d+++ +G g+W++ ++  g+ R++k+c++rw +yl
    NNU_018719-RA 14 KGAWSKQEDQKLIDYIRDHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding52.21.4e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
    NNU_018719-RA  67 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 112
                      8999******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.621961IPR017930Myb domain
SuperFamilySSF466891.15E-2712108IPR009057Homeodomain-like
SMARTSM007172.3E-131363IPR001005SANT/Myb domain
PfamPF002495.6E-151461IPR001005SANT/Myb domain
CDDcd001675.10E-111661No hitNo description
PROSITE profilePS5129426.90662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-2665117IPR009057Homeodomain-like
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
PfamPF002493.6E-1567112IPR001005SANT/Myb domain
CDDcd001671.72E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MTRKPCCDKQ DTNKGAWSKQ EDQKLIDYIR DHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF AEDEEDLIIK LHALLGNRWS LIAGRLPGRT DNEVKNYWNS HLRRKLISMG  120
IDPNNHRLNH TLPSPIFKKV SGSDISSGSK NQQATKPCPP EKSHGDEDQV SDGRSSLEED  180
TSACALPDLN LDLTMSTIPS SPVAITEERQ QIADSNVKKE TQTAPSPTLV LFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-291111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274638.11e-174PREDICTED: transcription repressor MYB6-like
SwissprotQ388512e-79MYB6_ARATH; Transcription repressor MYB6
SwissprotQ9SZP14e-79MYB4_ARATH; Transcription repressor MYB4
TrEMBLD7T8U61e-111D7T8U6_VITVI; Putative uncharacterized protein
STRINGVIT_01s0011g04760.t011e-110(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-80myb domain protein 6